PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn242001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 122aa    MW: 13854 Da    PI: 10.6195
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn242001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-132372148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv++  +  g   +W+ +ar  g+ R +k+c++rw +yl
       Achn242001 23 KGLWSPEEDEKLVKYMVMSSGQgqCWSEVARNAGLQRGGKSCRLRWINYL 72
                     678***********988888778*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4461876IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-191875IPR009057Homeodomain-like
SMARTSM007173.5E-72274IPR001005SANT/Myb domain
SuperFamilySSF466892.63E-1625100IPR009057Homeodomain-like
CDDcd001673.69E-82672No hitNo description
PfamPF139212.1E-122686No hitNo description
PROSITE profilePS500903.90373121IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.0E-77699IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MKMPSVPFGK NNNNVSSNYK MRKGLWSPEE DEKLVKYMVM SSGQGQCWSE VARNAGLQRG  60
GKSCRLRWIN YLRPDLKRGA FSSQEKEVIL HLHSLLGNRL VSSLSLDSRV SLLIPIRFER  120
D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132019.11e-44hypothetical protein PHAVU_011G059800g
SwissprotQ9LXV22e-39MYB46_ARATH; Transcription factor MYB46
TrEMBLV7AGN02e-44V7AGN0_PHAVU; Uncharacterized protein
STRINGGLYMA11G14200.25e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-39myb domain protein 46